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spice cupcakes frosted with brown butter cream cheese frosting and a caramel pecan filling - on a parchment paper with pecans.

Recipes

,

Cupcakes

Pecan Pie Cupcakes

prep 1 hour hr
cook 35 minutes mins
2 hours hrs

Soft spice cupcakes filled with gooey caramel pecans, frosted with brown butter cream cheese frosting and topped with more caramel pecans.

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Pecan Pie Cupcakes

November 12, 2026
November 12, 2026

Just when you think I have enough pecan pie recipes on this site, I’ll give you one more…the last one for a while at least lol. For reference we now have pecan pie, mini pecan pies, pecan pie bars, pecan pie brownies and pecan pie cookies lol.

These pecan pie cupcakes are a true showstopper if you ask me. They may be a smidge more work than an average cupcake but they’re also certainly more memorable. 

Table of Contents
  • Ingredient Notes & Substitutions
  • The Details:
    • Salted Caramel Sauce & Brown Butter
    • Spice Cupcakes
    • Pecan Pie Filling
    • Brown Butter Cream Cheese Frosting
  • Serving & Storage
  • Pecan Pie Cupcakes
spice cupcakes frosted with brown butter cream cheese frosting and a caramel pecan filling - on a parchment paper with pecans.

Ingredient Notes & Substitutions

Full recipe is in the recipe card at the bottom but just a few ingredients to note if you need to make some swaps!

  • Flour – I make my cupcakes with cake flour because it’s like the tiniest smidge more delicate but all-purpose flour works fine too. I just highly recommend a digital scale for measuring dry ingredients though! 
  • Spices – at the very least, use cinnamon but for more flavor, I added nutmeg and ginger too. 
  • Sugar – for the cupcake, I wanted it to be warm and cozy so I used some brown sugar but I don’t love the texture of cupcakes as much with all brown sugar so I did half white. The recipe does work fine with all white or all brown though, it’s just preference.
  • Butter – I recommend salted butter for the cupcake, caramel and frosting, it’ll really help balance the sweetness and just has a better flavor overall. Unsalted works fine if you need to but add an extra pinch of salt if you do. 
  • Sour cream – can be subbed with yogurt (plain or greek) 
  • Milk – I use full fat but 2% and dairy free milk also work well. 
pecan pie cupcakes sliced in half and on its back to show the inside
pecan pie cupcakes sliced in half and on its back to show the inside

The Details:

This isn’t your basic birthday cupcake with vanilla cake, a few sprinkles and cream cheese. This is a show stopper in mini cake form so bear with me. 

  1. Spice Cupcake – Pecan pie doesn’t normally have spices like cinnamon and nutmeg but I found that this makes the cupcake exponentially better so do it. 
  2. Frosting – I couldn’t decide between cream cheese frosting and brown butter frosting so I did both – brown butter cream cheese frosting and it’s probably the best frosting you’ll ever have. 
  3. Filling – We had to include pecan pie somewhere in here and a simple caramel sauce and pecan situation got the job done. I DO recommend making your own caramel sauce because store bought caramel is just not that good. 

Salted Caramel Sauce & Brown Butter

  1. Brown the butter for the frosting and set it aside to cool completely to room temperature.
  2. Heat the sugar and water until the sugar turns amber, swirling the pan occasionally without stirring.
  3. Remove from the heat and whisk in the butter, followed by the heavy cream and salt. Set aside to cool.
add cream to sugar syrup
5. add cream to caramelized sugar
homemade salted caramel sauce
consistency of homemade salted caramel sauce at room temperature.
brown solids settling
cook butter while stirring, until milk solids settle and brown
cooled and mixed brown butter
cooled and mixed brown butter

Spice Cupcakes

  1. Whisk together the dry ingredients and sugars.
  2. Beat in the oil and butter until combined.
  3. Mix in the egg and vanilla, followed by the sour cream and milk, until the batter is smooth.
  4. Divide the batter among the cupcake liners and bake until the tops spring back when gently pressed.
  5. Allow the cupcakes to cool completely, then cut a hole in the center of each one.
flour, sugar, spices, butter and oil mixed together in the glass bowl of a stand mixer with the whisk attachment
flour, sugar, spices, butter and oil mixed together
egg mixed into the cupcake batter in the glass bowl of a stand mixer with the whisk attachment
egg mixed into the cupcake batter
sour cream and milk mixed into the batter in a glass bowl for the stand mixer with the whisk attachment
sour cream and milk mixed into the batter
finished cupcake batter in cupcake tins lined with cupcake liners
spiced cupcakes finished baking, still in muffin pan with cupcake liners
cupcakes in muffin pan with a whole cut out of the center of the cupcake

Pecan Pie Filling

  1. Fold the pecans into the cooled salted caramel sauce.
  2. Spoon the filling into the center of each cupcake, reserving the rest for topping.
caramel sauce and chopped pecans mixed in a ceramic bowl
caramel and chopped pecans
pecan mixture filled into the whole in the cupcakes in the muffin pan

Brown Butter Cream Cheese Frosting

  1. Beat the cooled, softened brown butter with the cream cheese and vanilla until combined.
  2. Add the powdered sugar and beat until smooth and fluffy.
  3. Pipe a border around each cupcake, leaving a well in the center.
  4. Spoon the remaining pecan pie filling into the well.
cream cheese and brown butter at room temperature
cream cheese and brown butter at room temperature
creamed together
creamed together until smooth
add powdered sugar and mix until smooth
add powdered sugar and mix until smooth
cupcakes frosted with brown butter cream cheese frosting
pecan pie filling on top of frosted cupcakes

Serving & Storage

Store the cupcakes in an airtight container in the refrigerator for up to 5 days. Let them sit at room temperature for about 30–60 minutes before serving so the cake and frosting soften.

You can also freeze them in an airtight container for up to a couple of months. Thaw overnight in the refrigerator, then bring to room temperature before serving.

spice cupcakes frosted with brown butter cream cheese frosting and a caramel pecan filling dusted with cinnamon - on a parchment paper with pecans.

I hope you’re enjoying all the pecan pie inspired recipes as much as I am. If you have any questions just comment down below. 

If you make these, I would love it if you left a star rating or review below as well.

As always, have a blessed day and happy baking!

Love, B

spice cupcakes frosted with brown butter cream cheese frosting and a caramel pecan filling - on a parchment paper with pecans.
Recipes
Cupcakes

Pecan Pie Cupcakes

prep 1 hour hr
cook 35 minutes mins
2 hours hrs
total 3 hours hrs 35 minutes mins
Serves 13 cupcakes
Soft spice cupcakes filled with gooey caramel pecans, frosted with brown butter cream cheese frosting and topped with more caramel pecans.
Print Recipe Pin Recipe email recipe
Servings 13 cupcakes
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Ingredients

Salted Caramel Sauce

  • 200 grams granulated sugar
  • 60 mL water
  • 84 grams salted butter, room temperature
  • 120 mL heavy cream, room temperature
  • 1 tsp fine sea salt

Spice Cupcake

  • 180 grams cake flour, all purpose flour also works
  • 1 1/2 tsp baking powder
  • 1/4 tsp sea salt
  • 1 tsp ground cinnamon
  • 1/2 tsp ground nutmeg
  • 1/2 tsp ground ginger
  • 100 grams granulated sugar
  • 100 grams light brown sugar
  • 60 mL canola oil
  • 56 grams salted butter, room temperature
  • 1 large egg
  • 1 tsp pure vanilla extract
  • 113 grams sour cream
  • 80 mL whole milk, room temperature

Pecan Pie Filling

  • 250 grams homemade salted caramel sauce
  • 150 grams pecans, finely chopped

Brown Butter Cream Cheese Frosting

  • 113 grams salted butter , browned to 93 grams and brought back to room temperature
  • 113 grams cream cheese, room temperature
  • 240 grams powdered sugar
  • 1 Tbsp vanilla bean paste

Method

  1. Start by browning the butter for the frosting so it has time to cool completely. Place the butter in a small saucepan over medium-low heat. Allow it to melt completely, it'll sizzle and crackle and then once it gets quiet and starts to foam, stir contagiously for a minute or two as the solids brown.
    113 grams salted butter browned to 93 grams and brought back to room temperature
  2. Pour the butter with all the brown solid bits into a heat safe jar or container and allow it to come completely to room temperature before making the frosting.

Salted Caramel Sauce

  1. Begin by preparing the homemade salted caramel sauce. In a medium saucepan, heat the sugar and water over medium heat. Place the lid on the pan and remove it every 2-3 minutes to swirl (NOT stir) the sugar.
    200 grams granulated sugar, 60 mL water
  2. Once the sugar changes to an amber color, remove it from heat (it will continue cooking because the pan is hot so do this immediately). Stir in the butter and whisk continuously. Once that's combined, stir in the heavy cream and then the salt.
    84 grams salted butter room temperature, 120 mL heavy cream room temperature
  3. Once it’s all mixed, pour it into a heat safe bowl and stir in the salt. Set it aside and allow it to cool completely (can refrigerate for a little if needed and you can make the cupcakes).
    1 tsp fine sea salt

Spice Cupcake

  1. Preheat the oven to 350F/177C and line 15 muffin tins with cupcake liners (preferably a light colored pan).
  2. In a medium bowl, whisk together the cake flour, baking powder, salt, spices and sugars until they're evenly distributed (whisk well).
    180 grams cake flour all purpose flour also works , 1 1/2 tsp baking powder, 1/4 tsp sea salt, 1 tsp ground cinnamon, 1/2 tsp ground nutmeg, 1/2 tsp ground ginger, 100 grams granulated sugar, 100 grams light brown sugar
  3. Add the oil and butter to the dry ingredients and beat together until they’re combined.
    60 mL canola oil, 56 grams salted butter room temperature
  4. Add the egg and vanilla extract and paste and mix until they’re fully combined.
    1 large egg, 1 tsp pure vanilla extract
  5. Add the sour cream and turn the mixer to low speed, while streaming the milk in. Scrape the edge of the bowl and mix just until the cupcake batter is smooth.
    113 grams sour cream, 80 mL whole milk room temperature
  6. Fill each cupcake liner about 3/4 full, about 55 grams of batter per cupcake. You should have enough for 13 cupcakes.
  7. Bake for 18-20 minutes. If you press on the cupcake gently, it should bounce back. You can also insert a toothpick to make sure the batter is baked.
  8. Remove them from the oven and let them cool in the cupcake pan for a few minutes, then move them to a cooling rack. Allow the cupcakes to cool completely and then use a cupcake corer or a knife to cut a whole out the center. Set aside.

Pecan Pie Filling

  1. Once the caramel has cooled to room temperature, chop the pecans pretty finely – not ground up but pretty small chunks.
  2. Measure out the caramel (I recommend a scale) into a medium bowl and fold in the chopped pecans.
    250 grams homemade salted caramel sauce, 150 grams pecans finely chopped
  3. Use a spoon to fill each cupcake with the filling.

Brown Butter Cream Cheese Frosting

  1. Use the flat beater of a stand mixer to beat the butter, cream cheese and vanilla for 1-2 minutes at medium-high speed, just until they’re combined.
    113 grams salted butter browned to 93 grams and brought back to room temperature, 113 grams cream cheese room temperature, 1 Tbsp vanilla bean paste
  2. Add in the powdered sugar and beat at low speed until the sugar is combined and then increase to full speed for 2-3 minutes until the sugar is fully dissolved.
    240 grams powdered sugar
  3. Pipe a border of frosting around the edge of each cupcake, leaving a well in the center for the pecan filling.
  4. Fill in the well with the remain pecan pie filling and dust with a little more cinnamon!

Nutrition

Calories: 497kcalCarbohydrates: 59gProtein: 4gFat: 29gSaturated Fat: 11gPolyunsaturated Fat: 4gMonounsaturated Fat: 12gTrans Fat: 0.4gCholesterol: 55mgSodium: 462mgPotassium: 127mgFiber: 2gSugar: 46gVitamin A: 549IUVitamin C: 0.3mgCalcium: 85mgIron: 1mg
Course: Cupcakes
Cuisine: American
Keyword: brown-butter cream cheese frosting, caramel pecan pie, pecan pie cupcakes

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